Inside Israel's Covert War in Iran: Drones, Mossad Commandos, and Cyberattacks Drive 12-Day Conflict

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Israel's Secret War Inside Iran: Mossad Operatives, Drones, and Cyberattacks Uncovered in 12-Day Conflict

Gilan, Iran – June 27, 2025
As the 12-day war between Israel and Iran draws to a close, new revelations are surfacing about the depth of Israeli covert operations within Iranian borders — including the use of Mossad commandos, precision drone strikes, and massive cyber warfare, all coordinated with backing from the United States.

What began as an aerial assault in the early hours of June 13 turned into a multi-layered and hybrid offensive, targeting Iran’s military infrastructure, missile platforms, air defense systems, and even financial and digital institutions.


🕵️‍♂️ Mossad Operatives Inside Iran

In the first few hours of the offensive, grainy video footage released by Israel appeared to show Mossad agents deep inside Iranian territory, wearing tactical gear and operating under cover of darkness. These agents, likely embedded long before the conflict erupted, launched pre-emptive strikes using remotely operated Spike missiles—compact, precision-guided munitions.

One key objective: neutralize Iran’s air defense systems to clear the path for incoming Israeli warplanes and drones. Iranian state media later confirmed the use of such missiles, showcasing remnants of launch systems recovered in the desert.

A man stands outside a building in a residential area of Marzdaran district, where Iranian nuclear scientists were hit in drone strikes on June 25, 2025, in Tehran, Iran [Maajid Saeedi/Getty Images]

Authorities claimed the projectiles used “internet-based automation and remote-controlled systems”, operated by what they referred to as “terrorist Mossad agents.” The incident bears a striking resemblance to the 2020 assassination of Iranian nuclear scientist Mohsen Fakhrizadeh, in which a remote AI-guided weapon was smuggled into the country and detonated after the mission was completed.

In response to the latest infiltration, Iran executed three men in West Azerbaijan province this week, claiming their involvement in past assassinations, including Fakhrizadeh's.


🚁 Drone Warfare: Manufactured and Deployed Inside Iran

A striking element of the 2025 conflict was Israel’s widespread use of attack drones, both large military-grade UAVs like the Hermes 900 and smaller, explosive-laden quadcopters. These overwhelmed Iranian air defenses, which scrambled repeatedly to intercept the persistent aerial threats.

Iranian authorities said they discovered pick-up trucks with custom-built drone launch platforms, hidden under covered cargo beds. These mobile launchers were pre-programmed and remote-activated, allowing operatives to deploy small drones from within Iranian cities.

One major discovery was made in Shahr-e Rey, just south of Tehran, where a three-storey building served as a drone and weapons production hub. State media broadcast footage of six alleged Mossad operatives assembling drones and explosives, including timer bombs, grenades, and quadcopters modified for aerial strikes.

Authorities conducted nationwide search and surveillance operations, especially in the capital and northern provinces, where millions of residents had fled amid bombings. Countless roadblocks and checkpoints were established, primarily targeting pick-up trucks and rooftop surveillance equipment.


🧠 Surveillance and High-Level Assassinations

Among the most devastating moments for Iran was the assassination of Brigadier General Amir Ali Hajizadeh, the head of the Islamic Revolutionary Guard Corps’ (IRGC) aerospace division. Hajizadeh was killed in an underground bunker near Tehran, reportedly during a meeting with several top commanders.

State-linked media later released an undated video of Hajizadeh warning that “we are all under surveillance” by Israeli intelligence through mobile devices and other communication technologies.

His concerns now appear prophetic. Authorities say Mossad used a combination of surveillance drones, local collaborators, and cyber tools to track and eliminate high-profile targets.


💻 Cyberattacks and Digital Blackout

Israel’s attack was not limited to physical strikes. Massive cyberattacks by pro-Israel hacking groups crippled Iran’s two largest banks and its biggest cryptocurrency exchange, temporarily paralyzing the nation’s financial networks.

In an attempt to contain the situation, Iranian authorities implemented one of the most extensive internet blackouts in modern history, reportedly cutting off 97% of the country’s internet connectivity at the peak of the conflict, according to the NetBlocks internet observatory.


🗣️ What Israel Said

IDF Chief of Staff Eyal Zamir confirmed on Wednesday that Israeli commando forces had operated “covertly deep in enemy territory”, facilitating air strikes and drone deployments. Although he stopped short of confirming the Mossad videos, his comments align with the visual and tactical evidence released in the opening days of the conflict.


🇮🇷 Iran Responds with Arrests and Executions

Iranian authorities have launched a sweeping counter-intelligence campaign, arresting dozens of individuals across provinces accused of collaborating with Israel and the US. At least six people have been executed since the conflict began.

Although a ceasefire brokered by former US President Donald Trump went into effect two days ago, officials say they are still uncovering active Mossad networks inside the country.


🔍 Summary of Key Takeaways:

  • Israeli operatives launched attacks from inside Iranian territory, targeting radar and missile systems
  • Drone manufacturing hubs were discovered in Tehran suburbs, revealing local assembly operations
  • Cyberattacks disabled financial institutions and forced Iran into a near-total digital blackout
  • Top IRGC commanders, including Amir Ali Hajizadeh, were assassinated, reportedly using remote-guided tech
  • Iran has executed six alleged collaborators and detained dozens more
  • Ceasefire implemented, but damage and investigations are ongoing


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